PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1080s0011.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MIKC_MADS
Protein Properties Length: 241aa    MW: 27133.4 Da    PI: 5.276
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1080s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF901.2e-281059251
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         +i+n + rqvtfskRr g++KKAeELSvLCda+va+iifsstgkl+e++s
  Cagra.1080s0011.1.p 10 KIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCS 59
                         69**********************************************96 PP

2K-box52.62e-18921701997
                K-box  19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                           ++a++ kei    + +R++ Ge+L+ L+++eLqqLe++Le +l+++ ++K++ ++++i+elq+k  +l +enk+Lr++
  Cagra.1080s0011.1.p  92 SDHARMSKEIADKSHRLRQMRGEELHGLNIEELQQLEKALEAGLTRVIETKSDKIMNEISELQRKGMQLMDENKRLRQQ 170
                          5788999999999999*************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.333161IPR002100Transcription factor, MADS-box
SMARTSM004323.7E-40160IPR002100Transcription factor, MADS-box
CDDcd002651.38E-40277No hitNo description
SuperFamilySSF554551.83E-31375IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-27323IPR002100Transcription factor, MADS-box
PfamPF003194.9E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.71187180IPR002487Transcription factor, K-box
PfamPF014869.2E-1792170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009910Biological Processnegative regulation of flower development
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0005634Cellular Componentnucleus
GO:0000900Molecular Functiontranslation repressor activity, nucleic acid binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MAREKIQIRK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFEFCSS  60
SMKEVLERHN LQSKNLEKLD QPSLELQLVE NSDHARMSKE IADKSHRLRQ MRGEELHGLN  120
IEELQQLEKA LEAGLTRVIE TKSDKIMNEI SELQRKGMQL MDENKRLRQQ GTQLTEENER  180
LGMQIYNNVH ESGVDESENV AVYEEGHSSE SITNAGNSNG APVDSESSDT SLRLGLPYGG  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A3e-19370269MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_B3e-19370269MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_C3e-19370269MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_D3e-19370269MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
3kov_A4e-19369268Myocyte-specific enhancer factor 2A
3kov_B4e-19369268Myocyte-specific enhancer factor 2A
3kov_I4e-19369268Myocyte-specific enhancer factor 2A
3kov_J4e-19369268Myocyte-specific enhancer factor 2A
3p57_A4e-19369268Myocyte-specific enhancer factor 2A
3p57_B4e-19369268Myocyte-specific enhancer factor 2A
3p57_C4e-19369268Myocyte-specific enhancer factor 2A
3p57_D4e-19369268Myocyte-specific enhancer factor 2A
3p57_I4e-19369268Myocyte-specific enhancer factor 2A
3p57_J4e-19369268Myocyte-specific enhancer factor 2A
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00272DAPTransfer from AT2G22540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2111710.0AF211171.1 Arabidopsis thaliana short vegetative phase protein (SVP) mRNA, complete cds.
GenBankBT0330980.0BT033098.1 Arabidopsis thaliana unknown protein (At2g22540) mRNA, complete cds.
GenBankEU0786870.0EU078687.1 Arabidopsis thaliana short vegetative phase (SVP) mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294892.11e-176hypothetical protein CARUB_v10023941mg
SwissprotQ9FVC11e-165SVP_ARATH; MADS-box protein SVP
TrEMBLR0HR571e-176R0HR57_9BRAS; Uncharacterized protein
STRINGAT2G22540.11e-163(Arabidopsis thaliana)
STRINGfgenesh2_kg.4__174__AT2G22540.11e-163(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41902747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-155MIKC_MADS family protein